MCP server (5 fixes):
- Move semaphore acquisition inside goroutine so main loop stays
responsive when all slots are taken
- Add 10s write timeout to sendResponse to prevent pipe deadlock
when Claude Code pauses reading stdout
- Send fallback JSON-RPC error when json.Marshal fails instead of
silently swallowing the error and leaving caller waiting forever
- Silence unknown notification methods (req.ID == nil) instead of
sending unsolicited error responses that may desync the host
- Return MCP isError content for tool failures instead of top-level
JSON-RPC error, matching the MCP specification
Vector/embedding (3 fixes):
- Move EmbedBatchWithContext call before writeMu.Lock in AddDocuments
so ONNX inference runs outside the write lock
- Replace singleflight.Do with DoChan + ctx select in both
getOrComputeEmbedding and UnifiedSearch so callers can bail out
independently when their context expires
- Add activeQueries atomic counter; skip cache warming when user
queries are in-flight; reduce warming timeout from 5s to 2s
Hooks (4 fixes):
- Cap EnsureWorkerRunning to 15s hard deadline with context; reduce
StartupTimeout from 30s to 10s; reduce port-in-use retries
- Fix nil dereference panic in user-prompt hook when initResult is
nil (non-JSON worker response); use comma-ok assertions
- Use package-level hookClient/healthClient with DisableKeepAlives
to prevent FD leaks in short-lived hook processes
- Set SysProcAttr{Setpgid: true} to detach worker from hook process
group, preventing kill-cascade from Claude Code
Worker/DB (3 fixes):
- Replace os.Exit(0) in MCP config watcher with context cancellation
for clean protocol shutdown
- Add 60s context.WithTimeout around ProcessObservation calls in
processAllSessions to prevent hung CLI subprocesses from blocking
the queue processor forever
- Set explicit PRAGMA wal_autocheckpoint=1000 and add PASSIVE WAL
checkpoint to Optimize() to prevent checkpoint stalls
Adds 20+ regression tests across all fix areas.
* Make things 'betterer' across the board
* fix: reorganize struct fields and config parameters for consistency
- [x] Reorder Config struct fields alphabetically and by related functionality
- [x] Reorganize Observation model fields with archival fields grouped together
- [x] Reorder ObservationStore fields to group related members
- [x] Reorder Store struct fields with health check caching grouped
- [x] Reorganize HealthInfo and PoolMetrics struct field order
- [x] Reorder maintenance Service struct fields logically
- [x] Reorganize MCP server handler parameter structs alphabetically
- [x] Reorder pattern detector candidate tracking fields
- [x] Reorganize search Manager struct fields by functionality
- [x] Reorder vector Client struct fields with mutex protections grouped
- [x] Reorganize handler request/response struct fields
- [x] Update handlers_test.go to expect wrapped response format
- [x] Reorder middleware TokenAuth and rate limiter fields
- [x] Reorganize Service struct fields with grouped functionality
- [x] Fix RateLimiter field ordering for clarity
- [x] Reorder CircuitBreaker metrics fields
* fix(security): improve JSON output safety and path traversal protection
- [x] Replace unsafe JSON string formatting with proper json.Marshal in export handler
- [x] Remove escapeJSONString helper function in favor of standard JSON marshaling
- [x] Add safeResolvePath function to validate paths and prevent directory traversal
- [x] Apply path traversal validation in captureFileMtimes operations
- [x] Cap result slice capacity in getRecentSearchQueries to prevent DoS via excessive allocation
* fix(sdk): improve path traversal protection and allocation safety
- [x] Enhance safeResolvePath with stricter validation using filepath.Rel
- [x] Reject paths containing ".." after cleaning to prevent traversal
- [x] Validate absolute paths are within cwd when cwd is specified
- [x] Apply safeResolvePath validation to GetFileContent for consistency
- [x] Add comprehensive test coverage for path traversal protection
- [x] Fix allocation safety in getRecentSearchQueries by using constant capacity
* feat(dashboard): add graph stats and vector metrics endpoints
- [x] Add handleGraphStats endpoint for knowledge graph visualization
- [x] Add handleVectorMetrics endpoint for vector database dashboard
- [x] Improve update check error handling with JSON response
- [x] Register new API routes for graph and vector metrics
- [x] Migrate Font Awesome to npm package from CDN
- [x] Fix observations API response type handling
- [x] Update package version to v0.10.5-15-g385d05a
* fixup! feat(dashboard): add graph stats and vector metrics endpoints
* test: add comprehensive test coverage across multiple packages
- [x] Add 298 tests for Python chunker functionality
- [x] Add 213 tests for chunking types and constants
- [x] Add 398 tests for TypeScript/JavaScript chunker
- [x] Add 954 tests for MCP server handlers and validation
- [x] Add 563 tests for pattern detector and analysis
- [x] Add 1149 tests for vector client cache and operations
- [x] Add 663 tests for SDK processor, circuit breaker, and deduplication
- [x] Add 731 tests for session manager lifecycle and concurrency
- [x] Add 331 tests for similarity clustering and term extraction
* fix(pattern): add nil check and fmt import for GetPatternInsight
- [x] Add `fmt` import for error formatting
- [x] Add nil check for pattern before using it
- [x] Remove duplicate comment line
* refactor(hooks): simplify hook execution with shared context
- [x] Extract BaseInput struct to eliminate duplicate fields across hooks
- [x] Create RunHook handler pattern for session-start and user-prompt
- [x] Create RunStatuslineHook for fast statusline rendering without worker startup
- [x] Add HookContext struct to pass port, project, CWD, SessionID to handlers
- [x] Add db/interface.go with ObservationReader/Writer interfaces
- [x] Add comprehensive conflict management tests in sqlite/conflict_test.go
- [x] Add vector client tests for Count, ModelVersion, NeedsRebuild, GetStaleVectors
- [x] Add FilterByThreshold helper tests for query result filtering
- [x] Make handlers_test more robust for network-dependent update checks
- [x] Update package versions in UI
* Move to GORM + general cleanup
* feat(mcp): add observation relations discovery and scoring integration
- [x] Add find_related_observations MCP tool for discovering related observations by confidence
- [x] Integrate scoring calculator and recalculator into MCP server initialization
- [x] Add pattern, relation, and session stores to MCP server dependencies
- [x] Register MCP server in Claude Code settings during plugin installation
- [x] Update install scripts (bash, PowerShell) to configure MCP server settings
- [x] Switch plugin manifest files to template-based versioning (plugin.json.tpl, marketplace.json.tpl)
- [x] Update all MCP server tests to pass new dependency parameters
* Resolves issue #13
- Switched model to bge-small-en-v1.5
- Added lazy re-embedding
- Added model version tracking per vector
- Added conversion of vectors to the new model
* Add lfs support to the workflow.
* Implements importance scoring with decay + voting #6
* Resolves issue #5 by marking observations as superseeded and scheduled for deletion
* Implement pattern detection #7
* Improve injections and observations accuracy
- Session start: Recent observations for project context (recency-based)
- User prompt: Semantically relevant observations (similarity-based with threshold)
* Added two stage retrieval with bi and cross encoder #8
* Implement query expansion and reformulation #9
* Knowledge graph and relationships ( resolves#4 )
- File Overlap Detection: Detects relationships when observations modify/read the same files
- Concept Overlap Detection: Detects relationships based on shared semantic concepts
- Type Progression Detection: Infers relationships from natural observation type progressions (e.g., discovery → bugfix = "fixes")
- Temporal Proximity Detection: Detects relationships between observations in the same session within 5 minutes
- Narrative Mention Detection: Detects explicit relationship language in narratives (e.g., "fixes", "depends on", "supersedes")
* Add visualisation of the relations to the dashboard.
* fixup! Add visualisation of the relations to the dashboard.
* Update documentation with new settings and screenshots.
lukaszraczylo